A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.
Report
generated on 2025-05-06, 18:00 CEST
based on data in:
/users/genomics/jmartinez/data/02_preprocessed_fastqs/00_temp
General Statistics
Showing 216/216 rows and 5/7 columns.
| Sample Name | % Duplication | % > Q30 | Mb Q30 bases | Reads After Filtering | GC content | % PF | % Adapter |
|---|---|---|---|---|---|---|---|
| Aydin_2019_Ascl1_mm10_induced_SRR7132957 | 71.5% | 96.5% | 2297.4Mb | 47.6M | 48.8% | 99.8% | |
| Aydin_2019_Ascl1_mm10_induced_SRR7132958 | 74.3% | 96.3% | 1656.3Mb | 34.4M | 52.6% | 99.7% | 0.3% |
| Aydin_2019_Ascl1_mm10_induced_SRR7132963 | 60.3% | 98.1% | 1067.5Mb | 21.3M | 50.7% | 100.0% | |
| Aydin_2019_Ascl1_mm10_induced_SRR7132964 | 44.7% | 98.3% | 468.8Mb | 9.4M | 49.5% | 100.0% | |
| Aydin_2019_Ascl1_mm10_uninduced_SRR7132955 | 71.4% | 96.6% | 2101.5Mb | 28.6M | 53.8% | 99.6% | |
| Aydin_2019_Neurog2_mm10_induced_SRR7132959 | 75.6% | 96.2% | 1656.9Mb | 34.4M | 51.6% | 99.7% | |
| Aydin_2019_Neurog2_mm10_induced_SRR7132960 | 73.3% | 96.3% | 1593.2Mb | 33.1M | 52.1% | 99.8% | |
| Aydin_2019_Neurog2_mm10_induced_SRR7132968 | 66.3% | 96.8% | 2688.3Mb | 36.6M | 52.1% | 99.3% | 0.6% |
| Aydin_2019_Neurog2_mm10_induced_SRR7132969 | 90.6% | 96.3% | 2859.5Mb | 39.1M | 51.9% | 98.2% | 1.7% |
| Aydin_2019_Neurog2_mm10_uninduced_SRR7132956 | 66.6% | 96.6% | 2385.7Mb | 32.5M | 51.6% | 99.7% | |
| Casey_2018_Ascl1_mm10_induced_SRR5445236 | 49.4% | 92.5% | 1728.9Mb | 37.4M | 49.4% | 94.5% | |
| Casey_2018_Ascl1_mm10_induced_SRR5445237 | 51.8% | 94.1% | 1350.0Mb | 28.7M | 49.9% | 95.1% | |
| Casey_2018_Ascl1_mm10_induced_SRR5445238 | 58.3% | 94.3% | 1390.1Mb | 29.5M | 50.1% | 97.6% | |
| Casey_2018_Ascl1_mm10_uninduced_SRR5445233 | 48.8% | 92.5% | 1553.7Mb | 33.6M | 49.6% | 94.6% | |
| Casey_2018_Ascl1_mm10_uninduced_SRR5445234 | 53.1% | 94.1% | 1449.0Mb | 30.8M | 49.5% | 95.4% | |
| Casey_2018_Ascl1_mm10_uninduced_SRR5445235 | 55.1% | 94.5% | 1397.9Mb | 29.6M | 48.8% | 97.9% | |
| Casey_2018_Ascl2_mm10_induced_SRR5445242 | 46.2% | 92.4% | 1324.6Mb | 28.7M | 49.2% | 94.2% | |
| Casey_2018_Ascl2_mm10_induced_SRR5445243 | 50.1% | 94.2% | 1208.3Mb | 25.7M | 49.6% | 95.8% | |
| Casey_2018_Ascl2_mm10_induced_SRR5445244 | 56.5% | 94.3% | 1487.3Mb | 31.5M | 49.9% | 97.6% | 0.1% |
| Casey_2018_Ascl2_mm10_uninduced_SRR5445239 | 48.9% | 92.5% | 1433.0Mb | 31.0M | 49.6% | 94.5% | |
| Casey_2018_Ascl2_mm10_uninduced_SRR5445240 | 51.2% | 94.1% | 1449.9Mb | 30.8M | 50.2% | 95.5% | |
| Casey_2018_Ascl2_mm10_uninduced_SRR5445241 | 55.9% | 94.6% | 1347.0Mb | 28.5M | 48.9% | 97.6% | |
| Casey_2018_Myod1_mm10_induced_SRR5445248 | 45.8% | 92.6% | 1231.3Mb | 26.6M | 49.3% | 95.0% | |
| Casey_2018_Myod1_mm10_induced_SRR5445249 | 51.5% | 94.2% | 1540.6Mb | 32.7M | 49.9% | 95.3% | |
| Casey_2018_Myod1_mm10_induced_SRR5445250 | 57.4% | 94.5% | 1390.4Mb | 29.4M | 49.4% | 97.5% | 0.4% |
| Casey_2018_Myod1_mm10_uninduced_SRR5445245 | 50.3% | 92.5% | 1651.2Mb | 35.7M | 49.5% | 94.4% | |
| Casey_2018_Myod1_mm10_uninduced_SRR5445246 | 51.6% | 94.0% | 1219.1Mb | 25.9M | 49.9% | 95.7% | |
| Casey_2018_Myod1_mm10_uninduced_SRR5445247 | 55.0% | 94.5% | 1338.7Mb | 28.3M | 49.5% | 97.6% | |
| Conerly_2016_Myf5_Myod1_mm10_uninduced_SRR2970428_1 | 9.8% | 94.1% | 7797.3Mb | 83.9M | 50.8% | 94.4% | 1.1% |
| Conerly_2016_Myf5_Myod1_mm10_uninduced_SRR2970429_1 | 12.0% | 93.5% | 8558.5Mb | 92.6M | 51.1% | 93.2% | 0.8% |
| Conerly_2016_Myf5_mm10_induced_SRR2970427_1 | 10.7% | 94.0% | 7531.3Mb | 81.1M | 50.9% | 94.0% | 0.8% |
| Conerly_2016_Myod1_mm10_induced_SRR2970426_1 | 11.5% | 93.7% | 8855.8Mb | 95.6M | 51.0% | 93.6% | 0.8% |
| Costa_2022_Atoh1_mm10_induced_SRR10065697_1 | 16.6% | 95.4% | 7053.5Mb | 99.6M | 48.6% | 97.5% | 6.1% |
| Costa_2022_Atoh1_mm10_induced_SRR10065701_1 | 16.5% | 95.5% | 6893.4Mb | 97.2M | 49.0% | 97.4% | 5.1% |
| Costa_2022_Atoh1_mm10_uninduced_SRR10065689_1 | 15.8% | 95.6% | 6602.4Mb | 93.4M | 48.3% | 97.4% | 7.5% |
| Costa_2022_Atoh1_mm10_uninduced_SRR10065693_1 | 17.9% | 95.6% | 7945.0Mb | 112.0M | 49.0% | 97.5% | 5.7% |
| Croci_2017_Myc_mm10_induced_SRR3729536_1 | 42.1% | 92.1% | 9411.6Mb | 200.4M | 48.1% | 90.5% | 0.8% |
| Croci_2017_Myc_mm10_induced_SRR3729537_1 | 38.8% | 92.4% | 9284.1Mb | 197.0M | 47.3% | 91.2% | 0.6% |
| Croci_2017_Myc_mm10_induced_SRR3729538_1 | 35.8% | 89.6% | 9923.6Mb | 217.3M | 47.7% | 85.8% | 0.7% |
| Croci_2017_Myc_mm10_induced_SRR3729539_1 | 38.5% | 89.7% | 10487.5Mb | 229.4M | 47.3% | 86.6% | 0.5% |
| Croci_2017_Myc_mm10_uninduced_SRR3729540_1 | 36.8% | 88.0% | 9251.5Mb | 206.1M | 47.0% | 82.2% | 0.1% |
| Croci_2017_Myc_mm10_uninduced_SRR3729541_1 | 34.7% | 88.7% | 9689.4Mb | 214.3M | 47.3% | 83.7% | 0.7% |
| Croci_2017_Myc_mm10_uninduced_SRR3729542_1 | 28.9% | 86.2% | 9171.2Mb | 208.7M | 49.1% | 74.5% | 0.4% |
| Croci_2017_Myc_mm10_uninduced_SRR3729543_1 | 31.0% | 88.1% | 8555.3Mb | 190.4M | 48.3% | 79.2% | 0.7% |
| Fong_2015_Neurod2_mm10_induced_SRR1751360 | 47.9% | 96.0% | 2828.0Mb | 29.8M | 49.7% | 97.3% | 0.7% |
| Fong_2015_Neurod2_mm10_uninduced_SRR1751353 | 41.1% | 88.4% | 4566.3Mb | 52.3M | 50.4% | 88.2% | 1.0% |
| Gambardella_2020_Tfeb_hg38_induced_SRR5482597_1 | 6.3% | 94.6% | 3521.9Mb | 37.5M | 48.1% | 95.9% | 0.7% |
| Gambardella_2020_Tfeb_hg38_induced_SRR5482600_1 | 6.3% | 94.6% | 4931.4Mb | 52.5M | 49.8% | 96.5% | 1.0% |
| Gambardella_2020_Tfeb_hg38_induced_SRR5482609_1 | 7.1% | 95.4% | 4658.0Mb | 49.1M | 49.7% | 96.9% | 0.9% |
| Gambardella_2020_Tfeb_hg38_uninduced_SRR5482594_1 | 7.0% | 94.6% | 4806.0Mb | 51.2M | 49.9% | 96.6% | 1.2% |
| Jaenicke_2016_Myc_hg38_induced_SRR2069976 | 34.2% | 93.1% | 184.6Mb | 6.0M | 53.7% | 99.0% | 0.1% |
| Jaenicke_2016_Myc_hg38_induced_SRR2069981 | 37.8% | 94.9% | 181.6Mb | 5.8M | 53.3% | 99.1% | 0.2% |
| Jaenicke_2016_Myc_hg38_uninduced_SRR2069978 | 32.8% | 93.4% | 169.9Mb | 5.5M | 53.2% | 99.0% | 0.3% |
| Jaenicke_2016_Myc_hg38_uninduced_SRR2069983 | 35.4% | 94.9% | 167.2Mb | 5.3M | 53.7% | 99.2% | 0.2% |
| Joung_2023_Ascl1_hg38_induced_SRR22029592_1 | 13.5% | 95.8% | 2552.9Mb | 76.2M | 50.3% | 98.7% | 0.4% |
| Joung_2023_Ascl1_hg38_induced_SRR22029593_1 | 11.3% | 95.4% | 1643.6Mb | 49.2M | 50.6% | 98.6% | 0.3% |
| Joung_2023_Ascl1_hg38_induced_SRR22029594_1 | 12.7% | 95.7% | 3430.6Mb | 102.4M | 49.9% | 98.8% | 0.0% |
| Joung_2023_Ascl1_hg38_induced_SRR22029595_1 | 13.1% | 95.5% | 3606.0Mb | 107.9M | 50.4% | 98.7% | 0.2% |
| Joung_2023_Ascl1_hg38_uninduced_SRR22029620_1 | 12.7% | 95.6% | 2418.6Mb | 72.3M | 50.9% | 98.7% | 0.3% |
| Joung_2023_Ascl1_hg38_uninduced_SRR22029621_1 | 12.6% | 95.3% | 2450.6Mb | 73.5M | 50.8% | 98.6% | 0.4% |
| Joung_2023_Ascl1_hg38_uninduced_SRR22029622_1 | 15.0% | 95.7% | 3189.5Mb | 95.3M | 50.9% | 98.8% | 0.4% |
| Joung_2023_Ascl1_hg38_uninduced_SRR22029623_1 | 15.2% | 95.4% | 3207.6Mb | 96.1M | 50.7% | 98.7% | 0.4% |
| Jung_2017_Myc_hg38_induced_SRR3130255 | 26.4% | 97.2% | 110.5Mb | 3.4M | 52.4% | 99.6% | 0.4% |
| Jung_2017_Myc_hg38_induced_SRR3130256 | 24.8% | 96.8% | 110.1Mb | 3.4M | 53.0% | 99.6% | 0.2% |
| Jung_2017_Myc_hg38_induced_SRR3130257 | 25.3% | 97.2% | 110.6Mb | 3.5M | 51.3% | 99.6% | 0.1% |
| Jung_2017_Myc_hg38_uninduced_SRR3130252 | 27.4% | 97.6% | 111.1Mb | 3.5M | 48.2% | 99.6% | 0.3% |
| Jung_2017_Myc_hg38_uninduced_SRR3130253 | 26.0% | 96.8% | 110.1Mb | 3.4M | 53.2% | 99.6% | 0.2% |
| Jung_2017_Myc_hg38_uninduced_SRR3130254 | 24.6% | 97.2% | 110.6Mb | 3.4M | 51.6% | 99.6% | 0.4% |
| Kress_2016_Myc_mm10_induced_SRR3020309_1 | 33.0% | 92.0% | 5990.9Mb | 127.8M | 47.8% | 88.0% | 0.5% |
| Kress_2016_Myc_mm10_induced_SRR3020310_1 | 40.3% | 93.1% | 9341.3Mb | 196.8M | 46.7% | 89.5% | 1.0% |
| Kress_2016_Myc_mm10_induced_SRR3020311_1 | 41.0% | 92.0% | 6370.8Mb | 135.9M | 47.2% | 87.1% | 1.5% |
| Kress_2016_Myc_mm10_induced_SRR3020312_1 | 37.6% | 93.3% | 8191.3Mb | 172.3M | 46.9% | 89.4% | 1.0% |
| Kress_2016_Myc_mm10_uninduced_SRR3020294_1 | 39.8% | 94.8% | 8425.9Mb | 174.4M | 47.7% | 92.0% | 0.9% |
| Kress_2016_Myc_mm10_uninduced_SRR3020296_1 | 38.4% | 91.6% | 9342.6Mb | 200.0M | 47.8% | 87.9% | 0.8% |
| Kress_2016_Myc_mm10_uninduced_SRR3020297_1 | 25.9% | 86.4% | 7201.2Mb | 163.6M | 46.4% | 77.0% | 0.3% |
| Kress_2016_Myc_mm10_uninduced_SRR3020299_1 | 40.8% | 94.7% | 6531.2Mb | 135.3M | 54.1% | 91.2% | 1.3% |
| Lee_2020_Myod1_mm10_induced_SRR8558914_1 | 28.7% | 94.5% | 7014.1Mb | 75.7M | 51.8% | 97.3% | 13.0% |
| Lee_2020_Myod1_mm10_induced_SRR8558915_1 | 28.1% | 93.6% | 7239.7Mb | 78.7M | 52.4% | 96.8% | 11.8% |
| Letourneau_2014_Sim2_mm10_induced_SRR1514323_1 | 11.8% | 96.4% | 5089.1Mb | 53.9M | 50.6% | 97.3% | 1.8% |
| Letourneau_2014_Sim2_mm10_induced_SRR1514324_1 | 11.3% | 96.3% | 5237.2Mb | 55.6M | 50.8% | 97.1% | 2.9% |
| Letourneau_2014_Sim2_mm10_induced_SRR1514325_1 | 11.9% | 96.5% | 5706.6Mb | 60.4M | 50.6% | 97.8% | 1.8% |
| Letourneau_2014_Sim2_mm10_uninduced_SRR1514326_1 | 13.9% | 96.5% | 5645.7Mb | 59.8M | 50.5% | 97.7% | 2.1% |
| Letourneau_2014_Sim2_mm10_uninduced_SRR1514327_1 | 10.9% | 96.6% | 5571.6Mb | 59.0M | 49.4% | 97.8% | 1.9% |
| Letourneau_2014_Sim2_mm10_uninduced_SRR1514328_1 | 10.7% | 96.5% | 5415.5Mb | 57.4M | 49.5% | 97.3% | 2.0% |
| Li_2019_Twist2_mm10_induced_SRR3902242_1 | 3.9% | 84.0% | 2790.7Mb | 33.4M | 50.5% | 77.0% | 3.3% |
| Li_2019_Twist2_mm10_induced_SRR3902244_1 | 5.1% | 84.1% | 3362.4Mb | 40.1M | 50.6% | 76.9% | 2.9% |
| Li_2019_Twist2_mm10_uninduced_SRR3902238_1 | 4.1% | 84.3% | 2575.7Mb | 30.7M | 49.1% | 78.1% | 2.8% |
| Li_2019_Twist2_mm10_uninduced_SRR3902240_1 | 4.9% | 83.8% | 3055.2Mb | 36.6M | 49.6% | 76.7% | 3.2% |
| Liu_2023_Atoh8_hg38_induced_SRR17106013_1 | 23.2% | 94.7% | 8614.4Mb | 60.8M | 52.6% | 98.7% | 2.2% |
| Liu_2023_Atoh8_hg38_uninduced_SRR17106012_1 | 23.3% | 94.8% | 8714.4Mb | 61.6M | 49.8% | 98.5% | 2.9% |
| Lorenzin_2016_Myc_hg38_induced_SRR3132820 | 64.2% | 94.0% | 129.0Mb | 4.2M | 54.7% | 98.1% | 1.2% |
| Lorenzin_2016_Myc_hg38_induced_SRR3132825 | 28.7% | 94.9% | 118.4Mb | 3.8M | 51.2% | 99.3% | 0.4% |
| Lorenzin_2016_Myc_hg38_uninduced_SRR3132821 | 64.8% | 94.1% | 128.5Mb | 4.1M | 54.4% | 98.1% | 1.3% |
| Lorenzin_2016_Myc_hg38_uninduced_SRR3132826 | 28.2% | 94.9% | 117.4Mb | 3.7M | 50.8% | 99.3% | 0.3% |
| Manandhar_2016_Myod1_hg38_induced_SRR5151765 | 64.7% | 97.3% | 4160.7Mb | 85.6M | 46.3% | 98.7% | 0.4% |
| Manandhar_2016_Myod1_hg38_induced_SRR5151766 | 69.8% | 97.2% | 6006.6Mb | 123.6M | 47.9% | 99.1% | 0.3% |
| Manandhar_2016_Myod1_hg38_induced_SRR5151767 | 54.9% | 92.9% | 2647.0Mb | 55.9M | 48.0% | 98.6% | 0.1% |
| Manandhar_2016_Myod1_hg38_uninduced_SRR5151762 | 68.3% | 97.1% | 5033.1Mb | 103.7M | 47.1% | 98.9% | 0.2% |
| Manandhar_2016_Myod1_hg38_uninduced_SRR5151763 | 69.6% | 97.3% | 5382.7Mb | 110.6M | 48.8% | 99.2% | |
| Manandhar_2016_Myod1_hg38_uninduced_SRR5151764 | 59.0% | 93.1% | 3192.8Mb | 67.3M | 46.6% | 98.7% | 0.1% |
| Matsuda_2016_Neurod1_mm10_induced_SRR6118772 | 66.9% | 95.4% | 1890.7Mb | 38.9M | 50.3% | 99.7% | |
| Matsuda_2016_Neurod1_mm10_induced_SRR6118773 | 66.6% | 95.5% | 1816.2Mb | 37.3M | 50.2% | 99.6% | 0.2% |
| Matsuda_2016_Neurod1_mm10_induced_SRR6118774 | 67.4% | 95.5% | 1949.3Mb | 40.0M | 50.1% | 99.7% | |
| Matsuda_2016_Neurod1_mm10_induced_SRR6118775 | 61.7% | 95.6% | 1864.6Mb | 38.2M | 49.4% | 99.8% | |
| Matsuda_2016_Neurod1_mm10_induced_SRR6118776 | 63.9% | 95.7% | 2080.7Mb | 42.6M | 48.6% | 99.8% | |
| Matsuda_2016_Neurod1_mm10_induced_SRR6118777 | 62.9% | 95.6% | 2006.1Mb | 41.1M | 49.0% | 99.8% | |
| Matsuda_2016_Neurod1_mm10_uninduced_SRR6118766 | 69.9% | 95.5% | 2038.3Mb | 41.9M | 50.4% | 99.7% | |
| Matsuda_2016_Neurod1_mm10_uninduced_SRR6118767 | 69.1% | 95.4% | 1887.0Mb | 38.8M | 50.1% | 99.7% | |
| Matsuda_2016_Neurod1_mm10_uninduced_SRR6118768 | 69.0% | 95.5% | 1812.4Mb | 37.2M | 50.4% | 99.6% | 0.2% |
| Matsuda_2016_Neurod1_mm10_uninduced_SRR6118769 | 78.6% | 95.5% | 1976.9Mb | 40.6M | 50.0% | 99.6% | 0.2% |
| Matsuda_2016_Neurod1_mm10_uninduced_SRR6118770 | 73.9% | 95.5% | 1893.0Mb | 38.9M | 50.7% | 99.7% | |
| Matsuda_2016_Neurod1_mm10_uninduced_SRR6118771 | 77.8% | 95.5% | 2009.5Mb | 41.3M | 50.3% | 99.7% | 0.1% |
| Park_2017_Ascl1_hg38_induced_SRR4343488_1 | 10.3% | 93.9% | 10008.9Mb | 86.0M | 47.5% | 99.0% | 10.5% |
| Park_2017_Ascl1_hg38_induced_SRR4343489_1 | 10.6% | 94.1% | 11057.9Mb | 94.6M | 47.5% | 99.2% | 8.8% |
| Park_2017_Ascl1_hg38_induced_SRR4343490_1 | 10.1% | 94.0% | 10130.6Mb | 86.7M | 47.3% | 98.8% | 8.7% |
| Park_2017_Ascl1_hg38_uninduced_SRR4343485_1 | 10.9% | 94.0% | 10569.7Mb | 91.1M | 47.8% | 98.3% | 12.4% |
| Park_2017_Ascl1_hg38_uninduced_SRR4343486_1 | 11.8% | 94.1% | 9668.2Mb | 83.0M | 47.3% | 99.1% | 11.3% |
| Park_2017_Ascl1_hg38_uninduced_SRR4343487_1 | 10.8% | 93.9% | 9661.6Mb | 83.0M | 47.1% | 99.2% | 10.1% |
| Pataskar_2016_Neurod1_mm10_induced_SRR1765725 | 34.4% | 93.0% | 1228.5Mb | 25.9M | 47.9% | 99.6% | |
| Pataskar_2016_Neurod1_mm10_induced_SRR1765726 | 33.1% | 92.9% | 1145.4Mb | 24.2M | 47.9% | 99.6% | |
| Pataskar_2016_Neurod1_mm10_uninduced_SRR1765723 | 33.6% | 93.0% | 1355.1Mb | 28.6M | 47.7% | 99.6% | |
| Pataskar_2016_Neurod1_mm10_uninduced_SRR1765724 | 34.1% | 93.1% | 1183.0Mb | 24.9M | 47.6% | 99.6% | |
| Pereira_2024_Neurog2_mm10_induced_SRR20341394_1 | 30.1% | 92.0% | 3955.8Mb | 72.0M | 54.4% | 99.6% | 2.4% |
| Pereira_2024_Neurog2_mm10_induced_SRR20341395_1 | 28.4% | 90.4% | 3299.9Mb | 61.1M | 54.6% | 99.3% | 2.2% |
| Pereira_2024_Neurog2_mm10_induced_SRR20341396_1 | 29.5% | 83.5% | 4146.3Mb | 83.7M | 54.5% | 98.3% | 4.6% |
| Pereira_2024_Neurog2_mm10_uninduced_SRR20341391_1 | 22.8% | 79.6% | 1841.5Mb | 46.5M | 54.9% | 98.7% | 2.9% |
| Pereira_2024_Neurog2_mm10_uninduced_SRR20341392_1 | 20.8% | 79.2% | 2110.0Mb | 53.5M | 54.0% | 98.7% | 2.5% |
| Pereira_2024_Neurog2_mm10_uninduced_SRR20341393_1 | 24.6% | 82.4% | 1867.1Mb | 45.5M | 54.3% | 98.9% | 2.5% |
| Sabo_2014_Myc_mm10_induced_SRR997288_1 | 20.5% | 87.1% | 8097.4Mb | 182.4M | 48.5% | 80.7% | 0.6% |
| Sabo_2014_Myc_mm10_induced_SRR997289_1 | 25.8% | 91.8% | 9058.6Mb | 193.5M | 48.4% | 87.5% | 0.5% |
| Sabo_2014_Myc_mm10_induced_SRR997290_1 | 24.2% | 93.1% | 8136.9Mb | 171.4M | 48.2% | 90.2% | 0.1% |
| Sabo_2014_Myc_mm10_induced_SRR997291_1 | 23.9% | 90.6% | 8706.9Mb | 188.4M | 48.9% | 86.0% | 0.1% |
| Sabo_2014_Myc_mm10_uninduced_SRR997284_1 | 20.4% | 87.5% | 9872.2Mb | 221.3M | 47.3% | 82.7% | 0.4% |
| Sabo_2014_Myc_mm10_uninduced_SRR997285_1 | 28.1% | 92.8% | 9096.0Mb | 192.2M | 49.8% | 89.3% | 0.3% |
| Sabo_2014_Myc_mm10_uninduced_SRR997286_1 | 25.6% | 91.1% | 8767.4Mb | 188.8M | 49.0% | 86.1% | 0.3% |
| Sabo_2014_Myc_mm10_uninduced_SRR997287_1 | 25.7% | 90.5% | 9249.0Mb | 200.5M | 48.8% | 84.9% | 0.5% |
| See_2022_Myc_hg38_induced_SRR13429093_1 | 28.7% | 89.8% | 10106.9Mb | 112.1M | 53.0% | 93.3% | 4.7% |
| See_2022_Myc_hg38_induced_SRR13429096_1 | 25.8% | 90.0% | 9378.4Mb | 104.3M | 52.4% | 94.1% | 7.4% |
| See_2022_Myc_hg38_uninduced_SRR13429087_1 | 31.6% | 90.0% | 9400.1Mb | 104.0M | 53.3% | 94.3% | 4.4% |
| See_2022_Myc_hg38_uninduced_SRR13429090_1 | 24.2% | 89.1% | 7719.9Mb | 86.2M | 52.6% | 92.2% | 4.3% |
| Smith_2016_Neurog2_hg38_induced_SRR2989075 | 66.0% | 96.5% | 2360.0Mb | 48.9M | 49.3% | 97.4% | |
| Smith_2016_Neurog2_hg38_induced_SRR2989076 | 62.3% | 96.1% | 2026.7Mb | 42.2M | 48.4% | 97.0% | |
| Smith_2016_Neurog2_hg38_induced_SRR2989077 | 60.5% | 95.9% | 1751.7Mb | 36.5M | 48.8% | 97.1% | |
| Smith_2016_Neurog2_hg38_uninduced_SRR2989069 | 66.2% | 96.3% | 1565.2Mb | 32.5M | 50.8% | 97.3% | |
| Smith_2016_Neurog2_hg38_uninduced_SRR2989070 | 69.3% | 96.0% | 2232.0Mb | 46.5M | 51.4% | 96.5% | |
| Smith_2016_Neurog2_hg38_uninduced_SRR2989071 | 61.1% | 95.8% | 1818.8Mb | 38.0M | 48.9% | 97.1% | |
| Vainorius_2023_Ascl1_mm10_induced_SRR19845272 | 38.4% | 91.7% | 647.5Mb | 9.5M | 44.5% | 98.4% | |
| Vainorius_2023_Ascl1_mm10_induced_SRR19845273 | 37.6% | 90.9% | 598.3Mb | 8.9M | 43.7% | 96.5% | |
| Vainorius_2023_Ascl1_mm10_induced_SRR19845274 | 41.1% | 91.4% | 845.9Mb | 12.5M | 42.9% | 97.8% | |
| Vainorius_2023_Ascl1_mm10_uninduced_SRR19845275 | 34.1% | 91.4% | 624.6Mb | 9.2M | 43.1% | 98.3% | |
| Vainorius_2023_Ascl1_mm10_uninduced_SRR19845276 | 38.6% | 91.4% | 615.1Mb | 9.1M | 44.3% | 98.7% | |
| Vainorius_2023_Ascl1_mm10_uninduced_SRR19845277 | 35.2% | 91.4% | 515.5Mb | 7.6M | 44.2% | 98.3% | |
| Vainorius_2023_Neurog2_mm10_induced_SRR19845260 | 40.1% | 91.6% | 553.9Mb | 8.2M | 43.8% | 98.4% | |
| Vainorius_2023_Neurog2_mm10_induced_SRR19845261 | 39.9% | 91.2% | 595.7Mb | 8.8M | 43.4% | 97.6% | |
| Vainorius_2023_Neurog2_mm10_induced_SRR19845262 | 35.8% | 91.0% | 630.2Mb | 9.4M | 43.2% | 97.6% | |
| Vainorius_2023_Neurog2_mm10_uninduced_SRR19845263 | 32.1% | 91.0% | 381.1Mb | 5.7M | 43.7% | 96.9% | |
| Vainorius_2023_Neurog2_mm10_uninduced_SRR19845264 | 56.8% | 91.6% | 2334.3Mb | 34.4M | 43.9% | 98.6% | |
| Vainorius_2023_Neurog2_mm10_uninduced_SRR19845265 | 41.9% | 91.7% | 673.6Mb | 9.9M | 44.1% | 98.6% | |
| Walz_2014_Myc_hg38_induced_SRR987278 | 44.8% | 93.4% | 570.6Mb | 18.5M | 52.7% | 98.4% | 0.8% |
| Walz_2014_Myc_hg38_uninduced_SRR987281 | 46.5% | 93.2% | 663.5Mb | 21.6M | 52.5% | 98.4% | 0.8% |
| Wang_2023_Ascl1_hg38_induced_SRR21802814 | 57.5% | 91.2% | 3681.3Mb | 50.5M | 50.1% | 100.0% | |
| Wang_2023_Ascl1_hg38_induced_SRR21802815 | 58.0% | 91.8% | 3880.3Mb | 52.9M | 50.0% | 100.0% | |
| Wang_2023_Ascl1_hg38_induced_SRR21802903 | 62.4% | 90.0% | 5406.3Mb | 60.1M | 52.4% | 100.0% | |
| Wang_2023_Ascl1_hg38_induced_SRR21802904 | 61.4% | 90.0% | 5413.0Mb | 60.2M | 52.4% | 99.9% | 0.3% |
| Wang_2023_Ascl1_hg38_uninduced_SRR21802816 | 64.0% | 92.0% | 3723.1Mb | 50.6M | 50.3% | 100.0% | |
| Wang_2023_Ascl1_hg38_uninduced_SRR21802817 | 64.2% | 91.5% | 3692.0Mb | 50.5M | 50.4% | 100.0% | |
| Wang_2023_Ascl1_hg38_uninduced_SRR21802905 | 62.7% | 89.6% | 5368.1Mb | 60.0M | 52.7% | 99.9% | 0.4% |
| Wang_2023_Ascl1_hg38_uninduced_SRR21802906 | 61.1% | 90.0% | 4817.6Mb | 53.6M | 51.7% | 99.9% | 0.3% |
| Wapinski_2013_Ascl1_mm10_induced_SRR653914_1 | 40.2% | 88.9% | 16077.0Mb | 180.6M | 49.1% | 89.9% | 2.2% |
| Wapinski_2013_Ascl1_mm10_induced_SRR653915_1 | 10.6% | 83.7% | 8976.3Mb | 129.6M | 51.3% | 77.1% | 59.9% |
| Wapinski_2013_Ascl1_mm10_uninduced_SRR653912_1 | 39.9% | 90.2% | 14269.1Mb | 156.7M | 49.5% | 91.1% | 0.3% |
| Wapinski_2013_Ascl1_mm10_uninduced_SRR653913_1 | 11.5% | 82.2% | 7915.4Mb | 125.1M | 50.3% | 78.9% | 73.2% |
| Weber_2016_Hey1_mm10_induced_SRR1556799 | 39.6% | 95.7% | 100.7Mb | 3.2M | 52.9% | 97.2% | 2.6% |
| Weber_2016_Hey1_mm10_uninduced_SRR1556798 | 34.9% | 95.8% | 107.7Mb | 3.4M | 52.5% | 98.0% | 1.7% |
| Weber_2016_Hey2_mm10_induced_SRR1556801 | 69.3% | 91.6% | 677.4Mb | 22.4M | 48.0% | 98.2% | 0.9% |
| Weber_2016_Hey2_mm10_uninduced_SRR1556800 | 66.1% | 91.9% | 379.0Mb | 12.5M | 47.8% | 98.1% | 1.1% |
| Woods_2023_Ascl1_hg38_induced_SRR12150079 | 39.7% | 93.7% | 876.5Mb | 18.7M | 49.1% | 99.6% | |
| Woods_2023_Ascl1_hg38_induced_SRR12150080 | 43.8% | 93.5% | 960.0Mb | 20.5M | 49.2% | 99.4% | 0.2% |
| Woods_2023_Ascl1_hg38_induced_SRR12150081 | 42.5% | 93.4% | 867.4Mb | 18.6M | 49.2% | 99.5% | 0.4% |
| Woods_2023_Ascl1_hg38_induced_SRR12150082 | 39.8% | 93.4% | 982.3Mb | 21.0M | 48.4% | 99.6% | |
| Woods_2023_Ascl1_hg38_induced_SRR12150083 | 37.6% | 93.7% | 697.9Mb | 14.9M | 48.9% | 99.5% | 0.1% |
| Woods_2023_Ascl1_hg38_induced_SRR12150084 | 42.8% | 93.4% | 1154.6Mb | 24.7M | 49.4% | 99.5% | 0.4% |
| Woods_2023_Ascl1_hg38_induced_SRR12150085 | 39.7% | 94.0% | 685.1Mb | 14.6M | 49.4% | 99.5% | 0.4% |
| Woods_2023_Ascl1_hg38_induced_SRR12150086 | 42.7% | 93.9% | 987.3Mb | 21.0M | 49.0% | 99.5% | 0.2% |
| Woods_2023_Ascl1_hg38_induced_SRR12150087 | 41.9% | 93.5% | 917.3Mb | 19.6M | 49.5% | 99.6% | |
| Woods_2023_Ascl1_hg38_induced_SRR12150088 | 41.0% | 93.5% | 745.3Mb | 16.0M | 49.8% | 99.5% | 0.4% |
| Woods_2023_Ascl1_hg38_uninduced_SRR12150069 | 39.2% | 93.6% | 883.5Mb | 18.9M | 47.6% | 99.6% | |
| Woods_2023_Ascl1_hg38_uninduced_SRR12150070 | 44.9% | 93.4% | 639.1Mb | 13.7M | 48.2% | 99.3% | 0.3% |
| Woods_2023_Ascl1_hg38_uninduced_SRR12150071 | 41.2% | 93.5% | 826.0Mb | 17.7M | 47.8% | 99.5% | 0.2% |
| Woods_2023_Ascl1_hg38_uninduced_SRR12150072 | 35.9% | 93.7% | 580.6Mb | 12.4M | 48.1% | 99.6% | 0.5% |
| Woods_2023_Ascl1_hg38_uninduced_SRR12150073 | 41.6% | 93.8% | 838.5Mb | 17.9M | 48.1% | 99.6% | |
| Woods_2023_Ascl1_hg38_uninduced_SRR12150074 | 44.1% | 93.5% | 1229.8Mb | 26.3M | 47.6% | 99.6% | |
| Woods_2023_Ascl1_hg38_uninduced_SRR12150075 | 50.0% | 93.7% | 920.6Mb | 19.7M | 47.6% | 99.5% | 0.2% |
| Woods_2023_Ascl1_hg38_uninduced_SRR12150076 | 39.9% | 93.5% | 866.9Mb | 18.5M | 47.9% | 99.6% | |
| Woods_2023_Ascl1_hg38_uninduced_SRR12150077 | 40.0% | 93.8% | 826.3Mb | 17.6M | 48.2% | 99.6% | 0.3% |
| Woods_2023_Ascl1_hg38_uninduced_SRR12150078 | 39.4% | 93.7% | 842.3Mb | 18.0M | 48.1% | 99.6% | |
| Yu_2023_Twist1_hg38_induced_SRR17067382_1 | 11.2% | 96.3% | 2452.8Mb | 34.1M | 48.3% | 95.8% | 2.7% |
| Yu_2023_Twist1_hg38_uninduced_SRR17067378_1 | 12.8% | 96.4% | 2648.2Mb | 36.9M | 49.0% | 95.7% | 3.6% |
| de_Pretis_2017_Myc_mm10_induced_SRR5493433 | 21.5% | 84.8% | 28.1Mb | 0.7M | 56.3% | 80.8% | 1.3% |
| de_Pretis_2017_Myc_mm10_induced_SRR5493434 | 19.4% | 85.4% | 23.9Mb | 0.6M | 53.5% | 83.7% | |
| de_Pretis_2017_Myc_mm10_induced_SRR5493435 | 19.3% | 84.8% | 27.9Mb | 0.7M | 52.3% | 81.9% | 1.0% |
| de_Pretis_2017_Myc_mm10_induced_SRR5493438 | 25.4% | 86.0% | 30.4Mb | 0.7M | 58.2% | 86.4% | 1.3% |
| de_Pretis_2017_Myc_mm10_induced_SRR5493439 | 24.1% | 85.1% | 35.1Mb | 0.8M | 61.5% | 86.0% | 1.2% |
| de_Pretis_2017_Myc_mm10_induced_SRR5493455 | 15.6% | 83.9% | 27.7Mb | 0.7M | 62.3% | 80.9% | 0.5% |
| de_Pretis_2017_Myc_mm10_induced_SRR5493456 | 24.9% | 84.9% | 35.8Mb | 0.9M | 64.7% | 84.8% | 1.2% |
| de_Pretis_2017_Myc_mm10_induced_SRR5493457 | 22.0% | 85.6% | 29.6Mb | 0.7M | 62.2% | 85.3% | 0.9% |
| de_Pretis_2017_Myc_mm10_induced_SRR5493460 | 14.6% | 82.5% | 30.4Mb | 0.8M | 61.9% | 77.3% | 0.9% |
| de_Pretis_2017_Myc_mm10_induced_SRR5493461 | 14.9% | 82.2% | 43.2Mb | 1.1M | 61.4% | 76.7% | 0.9% |
| de_Pretis_2017_Myc_mm10_induced_SRR5493477 | 20.0% | 81.5% | 52.6Mb | 1.3M | 61.8% | 76.8% | 1.3% |
| de_Pretis_2017_Myc_mm10_induced_SRR5493478 | 23.0% | 84.8% | 44.0Mb | 1.1M | 62.4% | 84.4% | |
| de_Pretis_2017_Myc_mm10_induced_SRR5493479 | 22.5% | 85.0% | 40.0Mb | 1.0M | 62.5% | 84.3% | 0.9% |
| de_Pretis_2017_Myc_mm10_induced_SRR5493482 | 16.2% | 83.0% | 33.3Mb | 0.8M | 61.0% | 79.2% | 1.0% |
| de_Pretis_2017_Myc_mm10_induced_SRR5493483 | 17.7% | 83.5% | 42.0Mb | 1.0M | 61.2% | 80.1% | 1.0% |
| de_Pretis_2017_Myc_mm10_uninduced_SRR5493432 | 20.3% | 83.9% | 33.3Mb | 0.8M | 59.4% | 80.6% | 0.9% |
| de_Pretis_2017_Myc_mm10_uninduced_SRR5493454 | 15.7% | 83.3% | 32.9Mb | 0.8M | 61.2% | 78.6% | 0.5% |
| de_Pretis_2017_Myc_mm10_uninduced_SRR5493476 | 24.9% | 84.8% | 44.2Mb | 1.1M | 63.7% | 83.8% | 1.2% |
fastp
Version:
0.24.0
All-in-one FASTQ preprocessor (QC, adapters, trimming, filtering, splitting...).URL: https://github.com/OpenGene/fastpDOI: 10.1093/bioinformatics/bty560
Fastp goes through fastq files in a folder and perform a series of quality control and filtering. Quality control and reporting are displayed both before and after filtering, allowing for a clear depiction of the consequences of the filtering process. Notably, the latter can be conducted on a variety of parameters including quality scores, length, as well as the presence of adapters, polyG, or polyX tailing.Filtered Reads
Filtering statistics of sampled reads.
Insert Sizes
Insert size estimation of sampled reads.
Created with MultiQC
Sequence Quality
Average sequencing quality over each base of all reads.
Created with MultiQC
GC Content
Average GC content over each base of all reads.
Created with MultiQC
N content
Average N content over each base of all reads.
Created with MultiQC
Software Versions
Software Versions lists versions of software tools extracted from file contents.
| Software | Version |
|---|---|
| fastp | 0.24.0 |
