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        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411
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        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

        A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

        Report generated on 2025-05-06, 18:00 CEST based on data in: /users/genomics/jmartinez/data/02_preprocessed_fastqs/00_temp

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        General Statistics

        Showing 216/216 rows and 5/7 columns.
        Sample Name% Duplication% > Q30Mb Q30 basesReads After FilteringGC content% PF% Adapter
        Aydin_2019_Ascl1_mm10_induced_SRR7132957
        71.5%
        96.5%
        2297.4Mb
        47.6M
        48.8%
        99.8%
        Aydin_2019_Ascl1_mm10_induced_SRR7132958
        74.3%
        96.3%
        1656.3Mb
        34.4M
        52.6%
        99.7%
        0.3%
        Aydin_2019_Ascl1_mm10_induced_SRR7132963
        60.3%
        98.1%
        1067.5Mb
        21.3M
        50.7%
        100.0%
        Aydin_2019_Ascl1_mm10_induced_SRR7132964
        44.7%
        98.3%
        468.8Mb
        9.4M
        49.5%
        100.0%
        Aydin_2019_Ascl1_mm10_uninduced_SRR7132955
        71.4%
        96.6%
        2101.5Mb
        28.6M
        53.8%
        99.6%
        Aydin_2019_Neurog2_mm10_induced_SRR7132959
        75.6%
        96.2%
        1656.9Mb
        34.4M
        51.6%
        99.7%
        Aydin_2019_Neurog2_mm10_induced_SRR7132960
        73.3%
        96.3%
        1593.2Mb
        33.1M
        52.1%
        99.8%
        Aydin_2019_Neurog2_mm10_induced_SRR7132968
        66.3%
        96.8%
        2688.3Mb
        36.6M
        52.1%
        99.3%
        0.6%
        Aydin_2019_Neurog2_mm10_induced_SRR7132969
        90.6%
        96.3%
        2859.5Mb
        39.1M
        51.9%
        98.2%
        1.7%
        Aydin_2019_Neurog2_mm10_uninduced_SRR7132956
        66.6%
        96.6%
        2385.7Mb
        32.5M
        51.6%
        99.7%
        Casey_2018_Ascl1_mm10_induced_SRR5445236
        49.4%
        92.5%
        1728.9Mb
        37.4M
        49.4%
        94.5%
        Casey_2018_Ascl1_mm10_induced_SRR5445237
        51.8%
        94.1%
        1350.0Mb
        28.7M
        49.9%
        95.1%
        Casey_2018_Ascl1_mm10_induced_SRR5445238
        58.3%
        94.3%
        1390.1Mb
        29.5M
        50.1%
        97.6%
        Casey_2018_Ascl1_mm10_uninduced_SRR5445233
        48.8%
        92.5%
        1553.7Mb
        33.6M
        49.6%
        94.6%
        Casey_2018_Ascl1_mm10_uninduced_SRR5445234
        53.1%
        94.1%
        1449.0Mb
        30.8M
        49.5%
        95.4%
        Casey_2018_Ascl1_mm10_uninduced_SRR5445235
        55.1%
        94.5%
        1397.9Mb
        29.6M
        48.8%
        97.9%
        Casey_2018_Ascl2_mm10_induced_SRR5445242
        46.2%
        92.4%
        1324.6Mb
        28.7M
        49.2%
        94.2%
        Casey_2018_Ascl2_mm10_induced_SRR5445243
        50.1%
        94.2%
        1208.3Mb
        25.7M
        49.6%
        95.8%
        Casey_2018_Ascl2_mm10_induced_SRR5445244
        56.5%
        94.3%
        1487.3Mb
        31.5M
        49.9%
        97.6%
        0.1%
        Casey_2018_Ascl2_mm10_uninduced_SRR5445239
        48.9%
        92.5%
        1433.0Mb
        31.0M
        49.6%
        94.5%
        Casey_2018_Ascl2_mm10_uninduced_SRR5445240
        51.2%
        94.1%
        1449.9Mb
        30.8M
        50.2%
        95.5%
        Casey_2018_Ascl2_mm10_uninduced_SRR5445241
        55.9%
        94.6%
        1347.0Mb
        28.5M
        48.9%
        97.6%
        Casey_2018_Myod1_mm10_induced_SRR5445248
        45.8%
        92.6%
        1231.3Mb
        26.6M
        49.3%
        95.0%
        Casey_2018_Myod1_mm10_induced_SRR5445249
        51.5%
        94.2%
        1540.6Mb
        32.7M
        49.9%
        95.3%
        Casey_2018_Myod1_mm10_induced_SRR5445250
        57.4%
        94.5%
        1390.4Mb
        29.4M
        49.4%
        97.5%
        0.4%
        Casey_2018_Myod1_mm10_uninduced_SRR5445245
        50.3%
        92.5%
        1651.2Mb
        35.7M
        49.5%
        94.4%
        Casey_2018_Myod1_mm10_uninduced_SRR5445246
        51.6%
        94.0%
        1219.1Mb
        25.9M
        49.9%
        95.7%
        Casey_2018_Myod1_mm10_uninduced_SRR5445247
        55.0%
        94.5%
        1338.7Mb
        28.3M
        49.5%
        97.6%
        Conerly_2016_Myf5_Myod1_mm10_uninduced_SRR2970428_1
        9.8%
        94.1%
        7797.3Mb
        83.9M
        50.8%
        94.4%
        1.1%
        Conerly_2016_Myf5_Myod1_mm10_uninduced_SRR2970429_1
        12.0%
        93.5%
        8558.5Mb
        92.6M
        51.1%
        93.2%
        0.8%
        Conerly_2016_Myf5_mm10_induced_SRR2970427_1
        10.7%
        94.0%
        7531.3Mb
        81.1M
        50.9%
        94.0%
        0.8%
        Conerly_2016_Myod1_mm10_induced_SRR2970426_1
        11.5%
        93.7%
        8855.8Mb
        95.6M
        51.0%
        93.6%
        0.8%
        Costa_2022_Atoh1_mm10_induced_SRR10065697_1
        16.6%
        95.4%
        7053.5Mb
        99.6M
        48.6%
        97.5%
        6.1%
        Costa_2022_Atoh1_mm10_induced_SRR10065701_1
        16.5%
        95.5%
        6893.4Mb
        97.2M
        49.0%
        97.4%
        5.1%
        Costa_2022_Atoh1_mm10_uninduced_SRR10065689_1
        15.8%
        95.6%
        6602.4Mb
        93.4M
        48.3%
        97.4%
        7.5%
        Costa_2022_Atoh1_mm10_uninduced_SRR10065693_1
        17.9%
        95.6%
        7945.0Mb
        112.0M
        49.0%
        97.5%
        5.7%
        Croci_2017_Myc_mm10_induced_SRR3729536_1
        42.1%
        92.1%
        9411.6Mb
        200.4M
        48.1%
        90.5%
        0.8%
        Croci_2017_Myc_mm10_induced_SRR3729537_1
        38.8%
        92.4%
        9284.1Mb
        197.0M
        47.3%
        91.2%
        0.6%
        Croci_2017_Myc_mm10_induced_SRR3729538_1
        35.8%
        89.6%
        9923.6Mb
        217.3M
        47.7%
        85.8%
        0.7%
        Croci_2017_Myc_mm10_induced_SRR3729539_1
        38.5%
        89.7%
        10487.5Mb
        229.4M
        47.3%
        86.6%
        0.5%
        Croci_2017_Myc_mm10_uninduced_SRR3729540_1
        36.8%
        88.0%
        9251.5Mb
        206.1M
        47.0%
        82.2%
        0.1%
        Croci_2017_Myc_mm10_uninduced_SRR3729541_1
        34.7%
        88.7%
        9689.4Mb
        214.3M
        47.3%
        83.7%
        0.7%
        Croci_2017_Myc_mm10_uninduced_SRR3729542_1
        28.9%
        86.2%
        9171.2Mb
        208.7M
        49.1%
        74.5%
        0.4%
        Croci_2017_Myc_mm10_uninduced_SRR3729543_1
        31.0%
        88.1%
        8555.3Mb
        190.4M
        48.3%
        79.2%
        0.7%
        Fong_2015_Neurod2_mm10_induced_SRR1751360
        47.9%
        96.0%
        2828.0Mb
        29.8M
        49.7%
        97.3%
        0.7%
        Fong_2015_Neurod2_mm10_uninduced_SRR1751353
        41.1%
        88.4%
        4566.3Mb
        52.3M
        50.4%
        88.2%
        1.0%
        Gambardella_2020_Tfeb_hg38_induced_SRR5482597_1
        6.3%
        94.6%
        3521.9Mb
        37.5M
        48.1%
        95.9%
        0.7%
        Gambardella_2020_Tfeb_hg38_induced_SRR5482600_1
        6.3%
        94.6%
        4931.4Mb
        52.5M
        49.8%
        96.5%
        1.0%
        Gambardella_2020_Tfeb_hg38_induced_SRR5482609_1
        7.1%
        95.4%
        4658.0Mb
        49.1M
        49.7%
        96.9%
        0.9%
        Gambardella_2020_Tfeb_hg38_uninduced_SRR5482594_1
        7.0%
        94.6%
        4806.0Mb
        51.2M
        49.9%
        96.6%
        1.2%
        Jaenicke_2016_Myc_hg38_induced_SRR2069976
        34.2%
        93.1%
        184.6Mb
        6.0M
        53.7%
        99.0%
        0.1%
        Jaenicke_2016_Myc_hg38_induced_SRR2069981
        37.8%
        94.9%
        181.6Mb
        5.8M
        53.3%
        99.1%
        0.2%
        Jaenicke_2016_Myc_hg38_uninduced_SRR2069978
        32.8%
        93.4%
        169.9Mb
        5.5M
        53.2%
        99.0%
        0.3%
        Jaenicke_2016_Myc_hg38_uninduced_SRR2069983
        35.4%
        94.9%
        167.2Mb
        5.3M
        53.7%
        99.2%
        0.2%
        Joung_2023_Ascl1_hg38_induced_SRR22029592_1
        13.5%
        95.8%
        2552.9Mb
        76.2M
        50.3%
        98.7%
        0.4%
        Joung_2023_Ascl1_hg38_induced_SRR22029593_1
        11.3%
        95.4%
        1643.6Mb
        49.2M
        50.6%
        98.6%
        0.3%
        Joung_2023_Ascl1_hg38_induced_SRR22029594_1
        12.7%
        95.7%
        3430.6Mb
        102.4M
        49.9%
        98.8%
        0.0%
        Joung_2023_Ascl1_hg38_induced_SRR22029595_1
        13.1%
        95.5%
        3606.0Mb
        107.9M
        50.4%
        98.7%
        0.2%
        Joung_2023_Ascl1_hg38_uninduced_SRR22029620_1
        12.7%
        95.6%
        2418.6Mb
        72.3M
        50.9%
        98.7%
        0.3%
        Joung_2023_Ascl1_hg38_uninduced_SRR22029621_1
        12.6%
        95.3%
        2450.6Mb
        73.5M
        50.8%
        98.6%
        0.4%
        Joung_2023_Ascl1_hg38_uninduced_SRR22029622_1
        15.0%
        95.7%
        3189.5Mb
        95.3M
        50.9%
        98.8%
        0.4%
        Joung_2023_Ascl1_hg38_uninduced_SRR22029623_1
        15.2%
        95.4%
        3207.6Mb
        96.1M
        50.7%
        98.7%
        0.4%
        Jung_2017_Myc_hg38_induced_SRR3130255
        26.4%
        97.2%
        110.5Mb
        3.4M
        52.4%
        99.6%
        0.4%
        Jung_2017_Myc_hg38_induced_SRR3130256
        24.8%
        96.8%
        110.1Mb
        3.4M
        53.0%
        99.6%
        0.2%
        Jung_2017_Myc_hg38_induced_SRR3130257
        25.3%
        97.2%
        110.6Mb
        3.5M
        51.3%
        99.6%
        0.1%
        Jung_2017_Myc_hg38_uninduced_SRR3130252
        27.4%
        97.6%
        111.1Mb
        3.5M
        48.2%
        99.6%
        0.3%
        Jung_2017_Myc_hg38_uninduced_SRR3130253
        26.0%
        96.8%
        110.1Mb
        3.4M
        53.2%
        99.6%
        0.2%
        Jung_2017_Myc_hg38_uninduced_SRR3130254
        24.6%
        97.2%
        110.6Mb
        3.4M
        51.6%
        99.6%
        0.4%
        Kress_2016_Myc_mm10_induced_SRR3020309_1
        33.0%
        92.0%
        5990.9Mb
        127.8M
        47.8%
        88.0%
        0.5%
        Kress_2016_Myc_mm10_induced_SRR3020310_1
        40.3%
        93.1%
        9341.3Mb
        196.8M
        46.7%
        89.5%
        1.0%
        Kress_2016_Myc_mm10_induced_SRR3020311_1
        41.0%
        92.0%
        6370.8Mb
        135.9M
        47.2%
        87.1%
        1.5%
        Kress_2016_Myc_mm10_induced_SRR3020312_1
        37.6%
        93.3%
        8191.3Mb
        172.3M
        46.9%
        89.4%
        1.0%
        Kress_2016_Myc_mm10_uninduced_SRR3020294_1
        39.8%
        94.8%
        8425.9Mb
        174.4M
        47.7%
        92.0%
        0.9%
        Kress_2016_Myc_mm10_uninduced_SRR3020296_1
        38.4%
        91.6%
        9342.6Mb
        200.0M
        47.8%
        87.9%
        0.8%
        Kress_2016_Myc_mm10_uninduced_SRR3020297_1
        25.9%
        86.4%
        7201.2Mb
        163.6M
        46.4%
        77.0%
        0.3%
        Kress_2016_Myc_mm10_uninduced_SRR3020299_1
        40.8%
        94.7%
        6531.2Mb
        135.3M
        54.1%
        91.2%
        1.3%
        Lee_2020_Myod1_mm10_induced_SRR8558914_1
        28.7%
        94.5%
        7014.1Mb
        75.7M
        51.8%
        97.3%
        13.0%
        Lee_2020_Myod1_mm10_induced_SRR8558915_1
        28.1%
        93.6%
        7239.7Mb
        78.7M
        52.4%
        96.8%
        11.8%
        Letourneau_2014_Sim2_mm10_induced_SRR1514323_1
        11.8%
        96.4%
        5089.1Mb
        53.9M
        50.6%
        97.3%
        1.8%
        Letourneau_2014_Sim2_mm10_induced_SRR1514324_1
        11.3%
        96.3%
        5237.2Mb
        55.6M
        50.8%
        97.1%
        2.9%
        Letourneau_2014_Sim2_mm10_induced_SRR1514325_1
        11.9%
        96.5%
        5706.6Mb
        60.4M
        50.6%
        97.8%
        1.8%
        Letourneau_2014_Sim2_mm10_uninduced_SRR1514326_1
        13.9%
        96.5%
        5645.7Mb
        59.8M
        50.5%
        97.7%
        2.1%
        Letourneau_2014_Sim2_mm10_uninduced_SRR1514327_1
        10.9%
        96.6%
        5571.6Mb
        59.0M
        49.4%
        97.8%
        1.9%
        Letourneau_2014_Sim2_mm10_uninduced_SRR1514328_1
        10.7%
        96.5%
        5415.5Mb
        57.4M
        49.5%
        97.3%
        2.0%
        Li_2019_Twist2_mm10_induced_SRR3902242_1
        3.9%
        84.0%
        2790.7Mb
        33.4M
        50.5%
        77.0%
        3.3%
        Li_2019_Twist2_mm10_induced_SRR3902244_1
        5.1%
        84.1%
        3362.4Mb
        40.1M
        50.6%
        76.9%
        2.9%
        Li_2019_Twist2_mm10_uninduced_SRR3902238_1
        4.1%
        84.3%
        2575.7Mb
        30.7M
        49.1%
        78.1%
        2.8%
        Li_2019_Twist2_mm10_uninduced_SRR3902240_1
        4.9%
        83.8%
        3055.2Mb
        36.6M
        49.6%
        76.7%
        3.2%
        Liu_2023_Atoh8_hg38_induced_SRR17106013_1
        23.2%
        94.7%
        8614.4Mb
        60.8M
        52.6%
        98.7%
        2.2%
        Liu_2023_Atoh8_hg38_uninduced_SRR17106012_1
        23.3%
        94.8%
        8714.4Mb
        61.6M
        49.8%
        98.5%
        2.9%
        Lorenzin_2016_Myc_hg38_induced_SRR3132820
        64.2%
        94.0%
        129.0Mb
        4.2M
        54.7%
        98.1%
        1.2%
        Lorenzin_2016_Myc_hg38_induced_SRR3132825
        28.7%
        94.9%
        118.4Mb
        3.8M
        51.2%
        99.3%
        0.4%
        Lorenzin_2016_Myc_hg38_uninduced_SRR3132821
        64.8%
        94.1%
        128.5Mb
        4.1M
        54.4%
        98.1%
        1.3%
        Lorenzin_2016_Myc_hg38_uninduced_SRR3132826
        28.2%
        94.9%
        117.4Mb
        3.7M
        50.8%
        99.3%
        0.3%
        Manandhar_2016_Myod1_hg38_induced_SRR5151765
        64.7%
        97.3%
        4160.7Mb
        85.6M
        46.3%
        98.7%
        0.4%
        Manandhar_2016_Myod1_hg38_induced_SRR5151766
        69.8%
        97.2%
        6006.6Mb
        123.6M
        47.9%
        99.1%
        0.3%
        Manandhar_2016_Myod1_hg38_induced_SRR5151767
        54.9%
        92.9%
        2647.0Mb
        55.9M
        48.0%
        98.6%
        0.1%
        Manandhar_2016_Myod1_hg38_uninduced_SRR5151762
        68.3%
        97.1%
        5033.1Mb
        103.7M
        47.1%
        98.9%
        0.2%
        Manandhar_2016_Myod1_hg38_uninduced_SRR5151763
        69.6%
        97.3%
        5382.7Mb
        110.6M
        48.8%
        99.2%
        Manandhar_2016_Myod1_hg38_uninduced_SRR5151764
        59.0%
        93.1%
        3192.8Mb
        67.3M
        46.6%
        98.7%
        0.1%
        Matsuda_2016_Neurod1_mm10_induced_SRR6118772
        66.9%
        95.4%
        1890.7Mb
        38.9M
        50.3%
        99.7%
        Matsuda_2016_Neurod1_mm10_induced_SRR6118773
        66.6%
        95.5%
        1816.2Mb
        37.3M
        50.2%
        99.6%
        0.2%
        Matsuda_2016_Neurod1_mm10_induced_SRR6118774
        67.4%
        95.5%
        1949.3Mb
        40.0M
        50.1%
        99.7%
        Matsuda_2016_Neurod1_mm10_induced_SRR6118775
        61.7%
        95.6%
        1864.6Mb
        38.2M
        49.4%
        99.8%
        Matsuda_2016_Neurod1_mm10_induced_SRR6118776
        63.9%
        95.7%
        2080.7Mb
        42.6M
        48.6%
        99.8%
        Matsuda_2016_Neurod1_mm10_induced_SRR6118777
        62.9%
        95.6%
        2006.1Mb
        41.1M
        49.0%
        99.8%
        Matsuda_2016_Neurod1_mm10_uninduced_SRR6118766
        69.9%
        95.5%
        2038.3Mb
        41.9M
        50.4%
        99.7%
        Matsuda_2016_Neurod1_mm10_uninduced_SRR6118767
        69.1%
        95.4%
        1887.0Mb
        38.8M
        50.1%
        99.7%
        Matsuda_2016_Neurod1_mm10_uninduced_SRR6118768
        69.0%
        95.5%
        1812.4Mb
        37.2M
        50.4%
        99.6%
        0.2%
        Matsuda_2016_Neurod1_mm10_uninduced_SRR6118769
        78.6%
        95.5%
        1976.9Mb
        40.6M
        50.0%
        99.6%
        0.2%
        Matsuda_2016_Neurod1_mm10_uninduced_SRR6118770
        73.9%
        95.5%
        1893.0Mb
        38.9M
        50.7%
        99.7%
        Matsuda_2016_Neurod1_mm10_uninduced_SRR6118771
        77.8%
        95.5%
        2009.5Mb
        41.3M
        50.3%
        99.7%
        0.1%
        Park_2017_Ascl1_hg38_induced_SRR4343488_1
        10.3%
        93.9%
        10008.9Mb
        86.0M
        47.5%
        99.0%
        10.5%
        Park_2017_Ascl1_hg38_induced_SRR4343489_1
        10.6%
        94.1%
        11057.9Mb
        94.6M
        47.5%
        99.2%
        8.8%
        Park_2017_Ascl1_hg38_induced_SRR4343490_1
        10.1%
        94.0%
        10130.6Mb
        86.7M
        47.3%
        98.8%
        8.7%
        Park_2017_Ascl1_hg38_uninduced_SRR4343485_1
        10.9%
        94.0%
        10569.7Mb
        91.1M
        47.8%
        98.3%
        12.4%
        Park_2017_Ascl1_hg38_uninduced_SRR4343486_1
        11.8%
        94.1%
        9668.2Mb
        83.0M
        47.3%
        99.1%
        11.3%
        Park_2017_Ascl1_hg38_uninduced_SRR4343487_1
        10.8%
        93.9%
        9661.6Mb
        83.0M
        47.1%
        99.2%
        10.1%
        Pataskar_2016_Neurod1_mm10_induced_SRR1765725
        34.4%
        93.0%
        1228.5Mb
        25.9M
        47.9%
        99.6%
        Pataskar_2016_Neurod1_mm10_induced_SRR1765726
        33.1%
        92.9%
        1145.4Mb
        24.2M
        47.9%
        99.6%
        Pataskar_2016_Neurod1_mm10_uninduced_SRR1765723
        33.6%
        93.0%
        1355.1Mb
        28.6M
        47.7%
        99.6%
        Pataskar_2016_Neurod1_mm10_uninduced_SRR1765724
        34.1%
        93.1%
        1183.0Mb
        24.9M
        47.6%
        99.6%
        Pereira_2024_Neurog2_mm10_induced_SRR20341394_1
        30.1%
        92.0%
        3955.8Mb
        72.0M
        54.4%
        99.6%
        2.4%
        Pereira_2024_Neurog2_mm10_induced_SRR20341395_1
        28.4%
        90.4%
        3299.9Mb
        61.1M
        54.6%
        99.3%
        2.2%
        Pereira_2024_Neurog2_mm10_induced_SRR20341396_1
        29.5%
        83.5%
        4146.3Mb
        83.7M
        54.5%
        98.3%
        4.6%
        Pereira_2024_Neurog2_mm10_uninduced_SRR20341391_1
        22.8%
        79.6%
        1841.5Mb
        46.5M
        54.9%
        98.7%
        2.9%
        Pereira_2024_Neurog2_mm10_uninduced_SRR20341392_1
        20.8%
        79.2%
        2110.0Mb
        53.5M
        54.0%
        98.7%
        2.5%
        Pereira_2024_Neurog2_mm10_uninduced_SRR20341393_1
        24.6%
        82.4%
        1867.1Mb
        45.5M
        54.3%
        98.9%
        2.5%
        Sabo_2014_Myc_mm10_induced_SRR997288_1
        20.5%
        87.1%
        8097.4Mb
        182.4M
        48.5%
        80.7%
        0.6%
        Sabo_2014_Myc_mm10_induced_SRR997289_1
        25.8%
        91.8%
        9058.6Mb
        193.5M
        48.4%
        87.5%
        0.5%
        Sabo_2014_Myc_mm10_induced_SRR997290_1
        24.2%
        93.1%
        8136.9Mb
        171.4M
        48.2%
        90.2%
        0.1%
        Sabo_2014_Myc_mm10_induced_SRR997291_1
        23.9%
        90.6%
        8706.9Mb
        188.4M
        48.9%
        86.0%
        0.1%
        Sabo_2014_Myc_mm10_uninduced_SRR997284_1
        20.4%
        87.5%
        9872.2Mb
        221.3M
        47.3%
        82.7%
        0.4%
        Sabo_2014_Myc_mm10_uninduced_SRR997285_1
        28.1%
        92.8%
        9096.0Mb
        192.2M
        49.8%
        89.3%
        0.3%
        Sabo_2014_Myc_mm10_uninduced_SRR997286_1
        25.6%
        91.1%
        8767.4Mb
        188.8M
        49.0%
        86.1%
        0.3%
        Sabo_2014_Myc_mm10_uninduced_SRR997287_1
        25.7%
        90.5%
        9249.0Mb
        200.5M
        48.8%
        84.9%
        0.5%
        See_2022_Myc_hg38_induced_SRR13429093_1
        28.7%
        89.8%
        10106.9Mb
        112.1M
        53.0%
        93.3%
        4.7%
        See_2022_Myc_hg38_induced_SRR13429096_1
        25.8%
        90.0%
        9378.4Mb
        104.3M
        52.4%
        94.1%
        7.4%
        See_2022_Myc_hg38_uninduced_SRR13429087_1
        31.6%
        90.0%
        9400.1Mb
        104.0M
        53.3%
        94.3%
        4.4%
        See_2022_Myc_hg38_uninduced_SRR13429090_1
        24.2%
        89.1%
        7719.9Mb
        86.2M
        52.6%
        92.2%
        4.3%
        Smith_2016_Neurog2_hg38_induced_SRR2989075
        66.0%
        96.5%
        2360.0Mb
        48.9M
        49.3%
        97.4%
        Smith_2016_Neurog2_hg38_induced_SRR2989076
        62.3%
        96.1%
        2026.7Mb
        42.2M
        48.4%
        97.0%
        Smith_2016_Neurog2_hg38_induced_SRR2989077
        60.5%
        95.9%
        1751.7Mb
        36.5M
        48.8%
        97.1%
        Smith_2016_Neurog2_hg38_uninduced_SRR2989069
        66.2%
        96.3%
        1565.2Mb
        32.5M
        50.8%
        97.3%
        Smith_2016_Neurog2_hg38_uninduced_SRR2989070
        69.3%
        96.0%
        2232.0Mb
        46.5M
        51.4%
        96.5%
        Smith_2016_Neurog2_hg38_uninduced_SRR2989071
        61.1%
        95.8%
        1818.8Mb
        38.0M
        48.9%
        97.1%
        Vainorius_2023_Ascl1_mm10_induced_SRR19845272
        38.4%
        91.7%
        647.5Mb
        9.5M
        44.5%
        98.4%
        Vainorius_2023_Ascl1_mm10_induced_SRR19845273
        37.6%
        90.9%
        598.3Mb
        8.9M
        43.7%
        96.5%
        Vainorius_2023_Ascl1_mm10_induced_SRR19845274
        41.1%
        91.4%
        845.9Mb
        12.5M
        42.9%
        97.8%
        Vainorius_2023_Ascl1_mm10_uninduced_SRR19845275
        34.1%
        91.4%
        624.6Mb
        9.2M
        43.1%
        98.3%
        Vainorius_2023_Ascl1_mm10_uninduced_SRR19845276
        38.6%
        91.4%
        615.1Mb
        9.1M
        44.3%
        98.7%
        Vainorius_2023_Ascl1_mm10_uninduced_SRR19845277
        35.2%
        91.4%
        515.5Mb
        7.6M
        44.2%
        98.3%
        Vainorius_2023_Neurog2_mm10_induced_SRR19845260
        40.1%
        91.6%
        553.9Mb
        8.2M
        43.8%
        98.4%
        Vainorius_2023_Neurog2_mm10_induced_SRR19845261
        39.9%
        91.2%
        595.7Mb
        8.8M
        43.4%
        97.6%
        Vainorius_2023_Neurog2_mm10_induced_SRR19845262
        35.8%
        91.0%
        630.2Mb
        9.4M
        43.2%
        97.6%
        Vainorius_2023_Neurog2_mm10_uninduced_SRR19845263
        32.1%
        91.0%
        381.1Mb
        5.7M
        43.7%
        96.9%
        Vainorius_2023_Neurog2_mm10_uninduced_SRR19845264
        56.8%
        91.6%
        2334.3Mb
        34.4M
        43.9%
        98.6%
        Vainorius_2023_Neurog2_mm10_uninduced_SRR19845265
        41.9%
        91.7%
        673.6Mb
        9.9M
        44.1%
        98.6%
        Walz_2014_Myc_hg38_induced_SRR987278
        44.8%
        93.4%
        570.6Mb
        18.5M
        52.7%
        98.4%
        0.8%
        Walz_2014_Myc_hg38_uninduced_SRR987281
        46.5%
        93.2%
        663.5Mb
        21.6M
        52.5%
        98.4%
        0.8%
        Wang_2023_Ascl1_hg38_induced_SRR21802814
        57.5%
        91.2%
        3681.3Mb
        50.5M
        50.1%
        100.0%
        Wang_2023_Ascl1_hg38_induced_SRR21802815
        58.0%
        91.8%
        3880.3Mb
        52.9M
        50.0%
        100.0%
        Wang_2023_Ascl1_hg38_induced_SRR21802903
        62.4%
        90.0%
        5406.3Mb
        60.1M
        52.4%
        100.0%
        Wang_2023_Ascl1_hg38_induced_SRR21802904
        61.4%
        90.0%
        5413.0Mb
        60.2M
        52.4%
        99.9%
        0.3%
        Wang_2023_Ascl1_hg38_uninduced_SRR21802816
        64.0%
        92.0%
        3723.1Mb
        50.6M
        50.3%
        100.0%
        Wang_2023_Ascl1_hg38_uninduced_SRR21802817
        64.2%
        91.5%
        3692.0Mb
        50.5M
        50.4%
        100.0%
        Wang_2023_Ascl1_hg38_uninduced_SRR21802905
        62.7%
        89.6%
        5368.1Mb
        60.0M
        52.7%
        99.9%
        0.4%
        Wang_2023_Ascl1_hg38_uninduced_SRR21802906
        61.1%
        90.0%
        4817.6Mb
        53.6M
        51.7%
        99.9%
        0.3%
        Wapinski_2013_Ascl1_mm10_induced_SRR653914_1
        40.2%
        88.9%
        16077.0Mb
        180.6M
        49.1%
        89.9%
        2.2%
        Wapinski_2013_Ascl1_mm10_induced_SRR653915_1
        10.6%
        83.7%
        8976.3Mb
        129.6M
        51.3%
        77.1%
        59.9%
        Wapinski_2013_Ascl1_mm10_uninduced_SRR653912_1
        39.9%
        90.2%
        14269.1Mb
        156.7M
        49.5%
        91.1%
        0.3%
        Wapinski_2013_Ascl1_mm10_uninduced_SRR653913_1
        11.5%
        82.2%
        7915.4Mb
        125.1M
        50.3%
        78.9%
        73.2%
        Weber_2016_Hey1_mm10_induced_SRR1556799
        39.6%
        95.7%
        100.7Mb
        3.2M
        52.9%
        97.2%
        2.6%
        Weber_2016_Hey1_mm10_uninduced_SRR1556798
        34.9%
        95.8%
        107.7Mb
        3.4M
        52.5%
        98.0%
        1.7%
        Weber_2016_Hey2_mm10_induced_SRR1556801
        69.3%
        91.6%
        677.4Mb
        22.4M
        48.0%
        98.2%
        0.9%
        Weber_2016_Hey2_mm10_uninduced_SRR1556800
        66.1%
        91.9%
        379.0Mb
        12.5M
        47.8%
        98.1%
        1.1%
        Woods_2023_Ascl1_hg38_induced_SRR12150079
        39.7%
        93.7%
        876.5Mb
        18.7M
        49.1%
        99.6%
        Woods_2023_Ascl1_hg38_induced_SRR12150080
        43.8%
        93.5%
        960.0Mb
        20.5M
        49.2%
        99.4%
        0.2%
        Woods_2023_Ascl1_hg38_induced_SRR12150081
        42.5%
        93.4%
        867.4Mb
        18.6M
        49.2%
        99.5%
        0.4%
        Woods_2023_Ascl1_hg38_induced_SRR12150082
        39.8%
        93.4%
        982.3Mb
        21.0M
        48.4%
        99.6%
        Woods_2023_Ascl1_hg38_induced_SRR12150083
        37.6%
        93.7%
        697.9Mb
        14.9M
        48.9%
        99.5%
        0.1%
        Woods_2023_Ascl1_hg38_induced_SRR12150084
        42.8%
        93.4%
        1154.6Mb
        24.7M
        49.4%
        99.5%
        0.4%
        Woods_2023_Ascl1_hg38_induced_SRR12150085
        39.7%
        94.0%
        685.1Mb
        14.6M
        49.4%
        99.5%
        0.4%
        Woods_2023_Ascl1_hg38_induced_SRR12150086
        42.7%
        93.9%
        987.3Mb
        21.0M
        49.0%
        99.5%
        0.2%
        Woods_2023_Ascl1_hg38_induced_SRR12150087
        41.9%
        93.5%
        917.3Mb
        19.6M
        49.5%
        99.6%
        Woods_2023_Ascl1_hg38_induced_SRR12150088
        41.0%
        93.5%
        745.3Mb
        16.0M
        49.8%
        99.5%
        0.4%
        Woods_2023_Ascl1_hg38_uninduced_SRR12150069
        39.2%
        93.6%
        883.5Mb
        18.9M
        47.6%
        99.6%
        Woods_2023_Ascl1_hg38_uninduced_SRR12150070
        44.9%
        93.4%
        639.1Mb
        13.7M
        48.2%
        99.3%
        0.3%
        Woods_2023_Ascl1_hg38_uninduced_SRR12150071
        41.2%
        93.5%
        826.0Mb
        17.7M
        47.8%
        99.5%
        0.2%
        Woods_2023_Ascl1_hg38_uninduced_SRR12150072
        35.9%
        93.7%
        580.6Mb
        12.4M
        48.1%
        99.6%
        0.5%
        Woods_2023_Ascl1_hg38_uninduced_SRR12150073
        41.6%
        93.8%
        838.5Mb
        17.9M
        48.1%
        99.6%
        Woods_2023_Ascl1_hg38_uninduced_SRR12150074
        44.1%
        93.5%
        1229.8Mb
        26.3M
        47.6%
        99.6%
        Woods_2023_Ascl1_hg38_uninduced_SRR12150075
        50.0%
        93.7%
        920.6Mb
        19.7M
        47.6%
        99.5%
        0.2%
        Woods_2023_Ascl1_hg38_uninduced_SRR12150076
        39.9%
        93.5%
        866.9Mb
        18.5M
        47.9%
        99.6%
        Woods_2023_Ascl1_hg38_uninduced_SRR12150077
        40.0%
        93.8%
        826.3Mb
        17.6M
        48.2%
        99.6%
        0.3%
        Woods_2023_Ascl1_hg38_uninduced_SRR12150078
        39.4%
        93.7%
        842.3Mb
        18.0M
        48.1%
        99.6%
        Yu_2023_Twist1_hg38_induced_SRR17067382_1
        11.2%
        96.3%
        2452.8Mb
        34.1M
        48.3%
        95.8%
        2.7%
        Yu_2023_Twist1_hg38_uninduced_SRR17067378_1
        12.8%
        96.4%
        2648.2Mb
        36.9M
        49.0%
        95.7%
        3.6%
        de_Pretis_2017_Myc_mm10_induced_SRR5493433
        21.5%
        84.8%
        28.1Mb
        0.7M
        56.3%
        80.8%
        1.3%
        de_Pretis_2017_Myc_mm10_induced_SRR5493434
        19.4%
        85.4%
        23.9Mb
        0.6M
        53.5%
        83.7%
        de_Pretis_2017_Myc_mm10_induced_SRR5493435
        19.3%
        84.8%
        27.9Mb
        0.7M
        52.3%
        81.9%
        1.0%
        de_Pretis_2017_Myc_mm10_induced_SRR5493438
        25.4%
        86.0%
        30.4Mb
        0.7M
        58.2%
        86.4%
        1.3%
        de_Pretis_2017_Myc_mm10_induced_SRR5493439
        24.1%
        85.1%
        35.1Mb
        0.8M
        61.5%
        86.0%
        1.2%
        de_Pretis_2017_Myc_mm10_induced_SRR5493455
        15.6%
        83.9%
        27.7Mb
        0.7M
        62.3%
        80.9%
        0.5%
        de_Pretis_2017_Myc_mm10_induced_SRR5493456
        24.9%
        84.9%
        35.8Mb
        0.9M
        64.7%
        84.8%
        1.2%
        de_Pretis_2017_Myc_mm10_induced_SRR5493457
        22.0%
        85.6%
        29.6Mb
        0.7M
        62.2%
        85.3%
        0.9%
        de_Pretis_2017_Myc_mm10_induced_SRR5493460
        14.6%
        82.5%
        30.4Mb
        0.8M
        61.9%
        77.3%
        0.9%
        de_Pretis_2017_Myc_mm10_induced_SRR5493461
        14.9%
        82.2%
        43.2Mb
        1.1M
        61.4%
        76.7%
        0.9%
        de_Pretis_2017_Myc_mm10_induced_SRR5493477
        20.0%
        81.5%
        52.6Mb
        1.3M
        61.8%
        76.8%
        1.3%
        de_Pretis_2017_Myc_mm10_induced_SRR5493478
        23.0%
        84.8%
        44.0Mb
        1.1M
        62.4%
        84.4%
        de_Pretis_2017_Myc_mm10_induced_SRR5493479
        22.5%
        85.0%
        40.0Mb
        1.0M
        62.5%
        84.3%
        0.9%
        de_Pretis_2017_Myc_mm10_induced_SRR5493482
        16.2%
        83.0%
        33.3Mb
        0.8M
        61.0%
        79.2%
        1.0%
        de_Pretis_2017_Myc_mm10_induced_SRR5493483
        17.7%
        83.5%
        42.0Mb
        1.0M
        61.2%
        80.1%
        1.0%
        de_Pretis_2017_Myc_mm10_uninduced_SRR5493432
        20.3%
        83.9%
        33.3Mb
        0.8M
        59.4%
        80.6%
        0.9%
        de_Pretis_2017_Myc_mm10_uninduced_SRR5493454
        15.7%
        83.3%
        32.9Mb
        0.8M
        61.2%
        78.6%
        0.5%
        de_Pretis_2017_Myc_mm10_uninduced_SRR5493476
        24.9%
        84.8%
        44.2Mb
        1.1M
        63.7%
        83.8%
        1.2%

        fastp

        Version: 0.24.0

        All-in-one FASTQ preprocessor (QC, adapters, trimming, filtering, splitting...).URL: https://github.com/OpenGene/fastpDOI: 10.1093/bioinformatics/bty560

        Fastp goes through fastq files in a folder and perform a series of quality control and filtering. Quality control and reporting are displayed both before and after filtering, allowing for a clear depiction of the consequences of the filtering process. Notably, the latter can be conducted on a variety of parameters including quality scores, length, as well as the presence of adapters, polyG, or polyX tailing.

        Filtered Reads

        Filtering statistics of sampled reads.

        Created with MultiQC

        Insert Sizes

        Insert size estimation of sampled reads.

        Created with MultiQC

        Sequence Quality

        Average sequencing quality over each base of all reads.

        Created with MultiQC

        GC Content

        Average GC content over each base of all reads.

        Created with MultiQC

        N content

        Average N content over each base of all reads.

        Created with MultiQC

        Software Versions

        Software Versions lists versions of software tools extracted from file contents.

        SoftwareVersion
        fastp0.24.0